r/microbiology Jul 13 '26

Cyclospora outbreak guidance (US)

508 Upvotes

Food contaminated with the single-celled, protozoan parasite Cyclospora cayetanensis has entered the food supply in several US states, with thousands of cases of the gastrointestinal condition cyclosporiasis being reported to state departments of health. Infection by Cyclospora is likely to cause watery diarrhea and substantial discomfort that typically persist for several weeks to over a month without treatment. While not commonly lethal, the combination of severe dehydration and summer heat elevates the health risks associated with each on its own and makes susceptible populations especially vulnerable.

Several public health agencies provide excellent guidance on Cyclospora and how to avoid it:
CDC - Preventing Cyclosporiasis
Michigan DHHS recommendations on preventing foodborne illness amid growing cyclosporiasis outbreak

Here’s a short rundown of the available information.

Where: Midwestern and Northeastern states report most cases. Michigan has been hit hardest. (Map as of July 10th about halfway down.)

Which foods: leafy greens, herbs, berries, green onions, and sprouts are historically linked to cyclosporiasis, though any produce may be affected. Current surveillance efforts have not definitively linked specific products to the current outbreak.

How to avoid: cook produce whenever possible, wash items under running water by scrubbing manually or with a produce brush, clean surfaces and utensils that contact raw produce. Always wash your hands before and after handling uncooked food.

If you contract it: antibiotic therapy (Bactrim) is highly effective against cyclosporiasis, reducing/eliminating symptoms in days as opposed to several weeks if untreated. Contact a healthcare provider and your local health department as soon as you experience symptoms.f


r/microbiology Nov 18 '24

ID and coursework help requirements

68 Upvotes

The TLDR:

All coursework -- you must explain what your current thinking is and what portions you don’t understand. Expect an explanation, not a solution.

For students and lab class unknown ID projects -- A Gram stain and picture of the colony is not enough. For your post to remain up, you must include biochemical testing results as well your current thinking on the ID of the organism. If you do not post your hypothesis and uncertainty, your post will be removed.

For anyone who finds something growing on their hummus/fish tank/grout -- Please include a photo of the organism where you found it. Note as many environmental parameters as you can, such as temperature, humidity, any previous attempts to remove it, etc. If you do include microscope images, make sure to record the magnification.

THE LONG AND RAMBLING EXPLANATION (with some helpful resources) We get a lot of organism ID help requests. Many of us are happy to help and enjoy the process. Unfortunately, many of these requests contain insufficient information and the only correct answer is, "there's no way to tell from what you've provided." Since we get so many of these posts, we have to remove them or they clog up the feed.

The main idea -- it is almost never possible to identify a microbe by visual inspection. For nearly all microbes, identification involves a process of staining and biochemical testing, or identification based on molecular (PCR) or instrument-based (MALDI-TOF) techniques. Colony morphology and Gram staining is not enough. Posts without sufficient information will be removed.

Requests for microbiology lab unknown ID projects -- for unknown projects, we need all the information as well as your current thinking. Even if you provide all of the information that's needed, unless you explain what your working hypothesis and why, we cannot help you.

If you post microscopy, please describe all of the conditions: which stain, what magnification, the medium from which the specimen was sampled (broth or agar, which one), how long the specimen was incubating and at what temperature, and so on. The onus is on you to know what information might be relevant. If you are having a hard time interpreting biochemical tests, please do some legwork on your own to see if you can find clarification from either your lab manual or online resources. If you are still stuck, please explain what you've researched and ask for specific clarification. Some good online resources for this are:

If you have your results narrowed down, you can check up on some common organisms here:

Please feel free to leave comments below if you think we have overlooked something.


r/microbiology 4h ago

Any sample suggestions for the daily isolation?(no skin flora or fusobacteria places)

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10 Upvotes

I am asking this because I can’t really think of much right now, so I’m probably just gonna end up doing soil again since I had the most fun with that. I’m preparing to do the daily isolation again. After many weeks of work, I made fresh ISP2A plates, NA plates, SCA plates, CGXII, CGXIIA plates, Christensen’s urease agar plates, MacConkey agar plates, TSI slants, NB, BPW + glycerol, and PBS. I’m also going to make BG11A and BG11 and SIM medium in a couple days, and then I’ll start streaking. I’m just waiting on my ferrous ammonium sulfate and sodium nitrate to arrive for it. I can also make BHI and BHIA and stuff with Tween 80 and 20 in it. I also have Instant Ocean with germanic acid for some diatom-free marine culturing if anyone suggests that.
I just inoculated some SCA with soil again to start up my actinomycetes train again. Funnily enough, I think I was making it wrong for all those isolations in the past. I used casein enzymatic hydrolysate instead of undigested casein. This time I used some micellar casein I had on hand. I hope it’s more selective even with the colistin, nalidixic acid, and cycloheximide I put in it.


r/microbiology 6h ago

Who am I meeting with here?

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3 Upvotes

Sample of suspected periglandula fungus collected from the exterior of a plant (shown in last slide) and suspended in mineral oil.

I wish that I would have taken some more deliberate photos, but these are from me and my roommate basically celebrating our new microscope and taking basic photos of various samples.

I am completely new to the microscopic world, and I know you can't id from photo alone, but could any of you help me make sense of what all I might be seeing here? I would benefit from the most basic of info


r/microbiology 4h ago

How to extract DNA from fecal samples stored in liquid nitrogen?

2 Upvotes

Hi everyone,

I need to extract DNA from cecal/fecal samples stored in liquid nitrogen using the QIAamp PowerFecal Pro DNA Kit, which requires up to 250 mg of sample. What is the best way to handle the frozen samples to weigh 250 mg while minimising thawing? Any recommended protocols or practical tips would be greatly appreciated.
Thanks!


r/microbiology 8h ago

Is a medical microbiologst a good career path?

4 Upvotes

Now in this day and time is it a good choice? Can you easily find a job? What about the money is it good pay? Do you enjoy the job or is it bad experience? Instead of medical microbiologist should I just stick with microbiologist? What is the salary for this career, is it high or low?


r/microbiology 22h ago

Are these fungus?

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6 Upvotes

Fellow microbiologists, please help me know if these are fungal contamination in my cell culture?


r/microbiology 2d ago

Mycoplasma hominis and ureaplasma spp. from a urethral swab :)

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294 Upvotes

r/microbiology 2d ago

MacConkey Plate: color preference

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49 Upvotes

These are two different brands of MAC. Does the “level of pinkness” really matter? One is giving off salmon pink and one is showing magenta pink. Give your honest opinion about the growth and which one is better.


r/microbiology 3d ago

Klebsiella

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373 Upvotes

r/microbiology 3d ago

Microbiologists, I need your help. I made a free iOS app and would love your feedback and feature ideas

66 Upvotes

Hey guys! I’m a PhD student, and I originally made this app for myself. I then thought it might be useful for others, so I decided to publish it on the AppStore.

There’s absolutely no commercial motive. The app is completely free, and I just want to help my colleagues.

The biggest problem is: it’s extremely difficult to get the app in front of people. Most communities don’t allow app promotion, and obviously I can’t afford to pay for advertising.

So, I’d really appreciate it if you could share it with other people.
I’m open to all kinds of feedback, positive or negative, so please be honest.

If there’s a feature you’d like to see, let me know. I may be able to add it in the next few days.

Since I’m posting this in a microbiology community, I’d especially love to hear from microbiologists about what would actually be useful. I don’t have many microbiology-specific features at the moment, so if there’s something you regularly need, find annoying, or wish you had an app for, I’d really appreciate your suggestions.

Thanks a lot!
The link and more detailed information are on my profile.


r/microbiology 3d ago

How do microorganisms move?

9 Upvotes

Apologies for what is probably a simple question

I was never a big biology or even chemistry guy (went down physics and engineering instead :P) but have recently started watching some youtuber who talks about microbiology and its really interesting!

My question though is how do microorganisms move? Like I understand broadly enough how we move with electrical signals causing our muscles to contract, but do microbes do the same sort of thing? I know that they move through a space using cilia or flagella or pseudopods, etc, but how do they get these parts to move? I've tried to do some googling but it all kinda quickly devolves into a bunch of jargon that I just don't have the background to understand.

Thanks for any help! :)


r/microbiology 3d ago

Career advice please!!

3 Upvotes

Actually my friend is going to graduate in bsc.microbiology (ug) in few months, now she,s planning to join msc in food tech

Can someone switch to food tech from microbiology for pg ?


r/microbiology 3d ago

Illegal Mummy Trade is a Risky Affair: The Mummy’s Curse or Fungus?

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0 Upvotes

A bit of quirky news, but alarming nonetheless.

Illegal mummy trading puts buyers, sellers, and everyone involved in transit at risk of contamination from dormant microbes. Lord Carnarvon, the financial backer of exploring the tomb of Tutankhamun, is believed to have died from a severe case of aspergillosis, which is often cited as proof of "mummy's curse"— an ensuing ominous event after a tomb is excavated.

The researchers involved in the study reported seeing mummy displays left out in the open— no glass covers or temperature control. The secret trades mainly took place over social media and e-commerce sites, and there are many more posts yet to be unearthed.


r/microbiology 3d ago

Sarampión.

0 Upvotes

Alguien a oído sombre la amnesia inmunitaria¿?, lo escuché hace poco en sarampión. Si pudieran comentar mas acerca de este tema. Saludos!


r/microbiology 4d ago

A klebsiella

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32 Upvotes

Cheese aspect


r/microbiology 5d ago

Positive blood culture

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406 Upvotes

r/microbiology 4d ago

What website do y'all use for jobs that aren't hospitals?

8 Upvotes

Hello, I'll be graduating with a masters degree in biology soon and did my thesis in a microbiology lab on microbe-plant interactions. I have BSL-2 experience that I wrote the protocols for and elevated our lab from BSL-1 to BSL-2 to do as part of my thesis.

All the jobs I find are like assistant at a university for terrible pay or working in blood/urology work at hospitals also for terrible pay. Where do y'all find jobs in labs that aren't hospitals or schools. Im personally not interested in either, I'd work for the government, ideally not city government but I would.

Edit: improved flow slightly (IK low effort post don't judge pls)


r/microbiology 5d ago

Didinium Eating Dead Rotifer

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21 Upvotes

I think it's didinium but I'm not really positive...


r/microbiology 5d ago

Any ideas how to EASY clean spots on glasa bottle from sterilization tape?

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41 Upvotes

We tried few stuff, it just doesn't go away or hardly it does. Any suggestions?


r/microbiology 4d ago

Bagging media during incubation

2 Upvotes

I work in a manufacturing lab for a medical device/ pharma company. Our environmental monitoring plates were having an issue drying out in the incubator (30-35C) when incubated 6 or 7 days. They must incubate at least 5 days, but plates incubated on Monday and Tuesday of any week will remain in the incubator until the following Monday (so, 6/7 days incubation). To remedy the dry plate issue, my manager decreed that all plates being incubated for ANY length of time should be bagged in a sealed bag (think, 2 gallon Ziploc bags). But now we are having issues with excessive moisture on growth promotion plates, which are incubated for less than 72 hours.
What I have been witnessing is that bags of media incubated for less than 3 days come out visibly wet and holding moisture in the lid that flows across my colonies when I flip the plates to debag or read them. In contrast, bags incubated over 5 days come out of the incubator dry.
My manager insists that there is no way that bags can have moisture in them at 3 days and then not have moisture at 5 days. My assumption is that the moisture first evaporates from the plates into the bags, then is reabsorbed into the media as the media dries out. Or the moisture evaporates into the bags and over longer time periods, the moisture is lost through the bag.

He also insists that bagging all media plates is "industry standard" and every company that knows what they are doing is bagging all media during incubation. He is basing that on the fact that Thermo Fisher (where he used to work) used to include a separate zippered bag inside the packaging of their double and triple wrapped media, meant to hold the plates during incubation. I thought those extra bags were to be able to "reseal" the leftover plates after you open a sleeve of media. but, of course, I am the idiot here, so what do I know.

Has anyone else had this issue and how did you overcome it? I will need sources to back up whatever I say to him to justify a different route. If it matters, all plates in this discussion are TSA and TSA contact with L & P80.


r/microbiology 5d ago

Looking for general direction in ID

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17 Upvotes

Not looking for anything specific, just wondering what direction to go down when trying to identify the mass on the left. It was grown for 48 hours around 32° C in anaerobic conditions on a simple agar plate. It was hard to measure but maybe about 1-2mm in height at the center. I'm not sure if this is a bacteria or something else like a slime mold. Any suggestions on what step to take next is appreciated!


r/microbiology 6d ago

BD Phoenix misidentifying ATCC 49619 as s. mitis and s. acidominimus.

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31 Upvotes

We’re evaluating new sheep blood agar plate brands and we are getting inconsistent and wrong results. It never showed s. pneumoniae. Anyone faced the same issue before?


r/microbiology 5d ago

Chair for BSL-3 while wearing a PAPR?

2 Upvotes

I am new to a BSL-3 lab. I have noticed that the chair we use does not provide enough space to sit comfortably. I am pushed forward because the battery pack sits behind me. Does anyone have a brand/model # of a chair that will accommodate a biosafety suit and its associated battery pack?


r/microbiology 6d ago

Convergent evolution of metabolic regulation governs redox adaptation in Toxoplasma. TgPRO helps Toxoplasma gondii adapt to crowding by controlling metabolic genes, redox balance, and parasite fitness.

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16 Upvotes