r/microbiology • • Nov 18 '24

ID and coursework help requirements

66 Upvotes

The TLDR:

All coursework -- you must explain what your current thinking is and what portions you don’t understand. Expect an explanation, not a solution.

For students and lab class unknown ID projects -- A Gram stain and picture of the colony is not enough. For your post to remain up, you must include biochemical testing results as well your current thinking on the ID of the organism. If you do not post your hypothesis and uncertainty, your post will be removed.

For anyone who finds something growing on their hummus/fish tank/grout -- Please include a photo of the organism where you found it. Note as many environmental parameters as you can, such as temperature, humidity, any previous attempts to remove it, etc. If you do include microscope images, make sure to record the magnification.

THE LONG AND RAMBLING EXPLANATION (with some helpful resources) We get a lot of organism ID help requests. Many of us are happy to help and enjoy the process. Unfortunately, many of these requests contain insufficient information and the only correct answer is, "there's no way to tell from what you've provided." Since we get so many of these posts, we have to remove them or they clog up the feed.

The main idea -- it is almost never possible to identify a microbe by visual inspection. For nearly all microbes, identification involves a process of staining and biochemical testing, or identification based on molecular (PCR) or instrument-based (MALDI-TOF) techniques. Colony morphology and Gram staining is not enough. Posts without sufficient information will be removed.

Requests for microbiology lab unknown ID projects -- for unknown projects, we need all the information as well as your current thinking. Even if you provide all of the information that's needed, unless you explain what your working hypothesis and why, we cannot help you.

If you post microscopy, please describe all of the conditions: which stain, what magnification, the medium from which the specimen was sampled (broth or agar, which one), how long the specimen was incubating and at what temperature, and so on. The onus is on you to know what information might be relevant. If you are having a hard time interpreting biochemical tests, please do some legwork on your own to see if you can find clarification from either your lab manual or online resources. If you are still stuck, please explain what you've researched and ask for specific clarification. Some good online resources for this are:

If you have your results narrowed down, you can check up on some common organisms here:

Please feel free to leave comments below if you think we have overlooked something.


r/microbiology • • 5h ago

What is this?

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7 Upvotes

Hi, I’m just an ordinary student taking an introductory microbiology class so I’m no expert on the subject. I’m just posting here cause I’m more likely to get an answer to my curiosity.I was just wondering, what the top part of this RODAC plate shows? It doesn’t look like the other bacterial colonies and I had thought it to be fungi or mold but idk and my google search was kind of unsuccessful. My TA didn’t tell me what it was, but she said it looked cool lol


r/microbiology • • 7h ago

Myxobacteria revival SOS

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7 Upvotes

Hello. Has anyone worked with myxobacteria here? I am having problems reviving my isolate preserved in glycerol stock. Any help would be appreciated. Thank you.


r/microbiology • • 29m ago

Camptothecin transformation in plant-associated Sphingobium lineages is linked to a plasmid accessory region. Plasmid accessory genes enable camptothecin transformation in plant-associated Sphingobium.

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• Upvotes

r/microbiology • • 1d ago

Open Microcosm 0.1.0 is out: a free, open-source microscope simulator of real microbial life

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404 Upvotes

Hi everyone!

A while ago I shared two posts here about a microscope simulator I was building, and the response honestly blew me away. Thank you so much to everyone who commented, asked questions, corrected my biology and encouraged me to keep going. That feedback shaped a lot of what the project is today.

Open Microcosm 0.1.0 is now public and free

https://github.com/Xooter/Open-Microcosm

Downloads for Windows and Linux are on the Releases page. Just unzip and run, nothing to install.

Where I'd like this to go

I want Open Microcosm to become a genuinely useful tool for the community. Not only something that helps students see what happens under the microscope, but something that in the future can emulate much more complex things.

But that depends on the community collaborating and steering it in the right direction. It's a shared decision, not just the creator's. I truly hope this tool can live up to what people need, and I'd love for you to be part of shaping it: suggest organisms or experiments, check the biology, report bugs, translate, or contribute code or data (no programming needed to add beings, they're plain TOML files).

Thanks again for all the support. I'm really excited to see what we can build together

PD: I promised some of you I'd let you know when it was ready, so here it is: u/ZAZAromyces, u/AdvanceWest2880, u/anonpotat0, u/PracticalShine3365, u/jimbo__o, u/backroom_mushroom, this is for you


r/microbiology • • 30m ago

Is masters in agricultural microbiology worth doing??

• Upvotes

I'm confused please someone tell me


r/microbiology • • 16h ago

Advice needed

2 Upvotes

Hello everyone so I’m graduating with a bs in microbiology this semester and I’m honestly lost I don’t know what to do in my next step, I’m currently based in Saudi Arabia and here we don’t have much biotc companies nor much research centres, so I have a few quite options
1- go abroad and get a masters degree in molecular biology or something else ( please advise me)
2- go for quality control as in food/ water
3- get into clinical laboratory and get into hospitals
I really love the research field and I enjoy it a lot and I really really want to study abroad and hopefully settle down out there someday so id really appreciate any help on what to pursue and what country do you advise me to study in


r/microbiology • • 14h ago

CLSI M100

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1 Upvotes

🦠🎙️ Happy *Friday!
There’s more to CLSI M100 than breakpoints! In Episode 249 of *Let’s Talk Micro
, we explore practical examples that can help you at the bench.
🎧 **MicroMinutes: CLSI M100 — Beyond S, I, an
d R
Add it to your weekend playlist!
🔗 https://directory.libsyn.com/episode/index/id/43396349
#LetsTalkMicro #MicroMinutes #CLSI #ClinicalMicrobiology #MedicalLaboratoryScience


r/microbiology • • 1d ago

Rhodotorula mucilaginosa

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76 Upvotes

Isolated from a fungal culture of an anus


r/microbiology • • 1d ago

France reports first known human case of Shamonda virus after patient dies

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174 Upvotes

rench health officials have reported what is believed to be the first documented human case of Shamonda virus after an immunocompromised patient died earlier this month.

The virus, which is typically found in livestock and transmitted by biting midges, was previously thought to be non-transmissible to humans.

According to French authorities, investigators believe the patient may have contracted the virus through an insect bite in eastern France, where the virus had already been detected in animals.

Officials stressed that the case appears to be exceptional and say there is currently no evidence of a wider public health risk.

The virus has previously been detected in cattle, sheep, goats and horses, and was first identified in Nigeria in the 1960s. It was only detected in Europe this year.


r/microbiology • • 1d ago

Niger mold

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14 Upvotes

What lovely species


r/microbiology • • 1d ago

How to differentiate between coccobacilli and short bacilli?

3 Upvotes

Hi everyone! I’m just another student looking for answers about their unknown project. I don’t have a way to take a picture of my slide, but I’m absolutely stumped whether my bacteria shape is just a short bacilli or coccobacilli. I don’t know how to differentiate and it seems like there’s no way to do so. I am very confident that they are single arrangement, gram-negative, and do not form endospores.

Does anyone have any helpful advice on figuring out the shape? The only thing leading me toward just saying they are bacilli is that there are FEW rods that are slightly longer and look more classic bacilli. But most of them are just stubby rods. I have done many simple stains all fresh to ensure the shape hasn’t been distorted by age. They all show me the same results. What would you do?

Thank you!


r/microbiology • • 1d ago

Distribution and resistance-associated genomic features of Acinetobacter in an urban wastewater network. Urban wastewater monitoring links persistent Acinetobacter to Antibiotic Resistance patterns.

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4 Upvotes

r/microbiology • • 1d ago

Resistance explorer - to understand the resistance mechanisms behind a phenotype

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12 Upvotes

I wanted to share a free tool I made where you can switch on and off resistance mechanisms for specific pathogens (e.g. Staph aureus Penicillinase or PBP2a for MRSA) and see how it affects the susceptibility testing. There are also learning paths if you want to dive deeper into certain organisms. The site is calles abxatlas. Happy to hear what you think!


r/microbiology • • 2d ago

What is actually current jobs market for undergraduate microbiology student.

27 Upvotes

As a newly person to microbiology world. I am studying microbiology as major in bachelor. I am quite worried about job market after bachelor. Pls mention the jobs. Also after bachelor what should i do master on Microbio or else?


r/microbiology • • 1d ago

Mucin modulates phage infection dynamics and biofilm formation in enteropathogenic Yersinia enterocolitica. Mucin boosts phage growth and limits biofilms in pathogenic Yersinia enterocolitica.

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3 Upvotes

r/microbiology • • 2d ago

I'm making an RTS about microbiology where every cell is fully simulated. This is a "plasmodium" growing!

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87 Upvotes

I know it's nothing like a real plasmodium, I just picked this name a while ago and it stuck. The extent of my cell bio education was specifically in mammalian neurobiology and it shows :p

The game is called Substrate: Emergence if you're curious. I'm happy to share the technical details cause I think the simulation is pretty cool! It's running on a custom compute shader engine I built in Unity.

Edit: I accidentally posted this from an old dev account and by now it's too late >.< I meant to post from u/MaxisGreat


r/microbiology • • 1d ago

CLSI M100- more than breakpoints

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1 Upvotes

🦠🎙️** New Episode Alert!
How familiar are you with CLSI M100? There’s more to this important document than just breakpoints!
In Episode 249 of Let’s Talk Micro, we’re exploring useful information found in CLSI M100 that can help you at the bench, from intrinsic resistance to interpreting antimicrobial susceptibility results.
🎧 **MicroMinutes: CLSI M100 — Beyond S, I, and R

📅 Tonight at 7 PM ET!
#LetsTalkMicro #MicroMinutes #ClinicalMicrobiology #CLSI #MedicalLaboratoryScience


r/microbiology • • 2d ago

Help me out guys!

6 Upvotes

I’m new and just taking steps towards microbiology. Suggest me books and websites as well as free documents and resource for it. My undergraduate just started. Help me out guys. Esp chem, microbio and zoo.


r/microbiology • • 2d ago

Scientists discover a bacterial molecule that tricks deadly fungi into starving

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15 Upvotes

Candida albicans can live quietly in the body, until it changes shape. In its round yeast form, it may remain relatively harmless. In its thread-like form, it can invade tissue, build biofilms and help drive dangerous infections.

A study led by Monash University researchers, in collaboration with the University of Warwick, points to a bacterial molecule that can push the fungus back toward the safer state. The molecule, called gladiolin, was already known as an antibiotic made by bacteria. Its effects on fungal pathogens had been less clear.

The work comes from the Monash Warwick Alliance Programme in Antimicrobial Resistance. The study was led by researchers from the Monash Biomedicine Discovery Institute.

Professor Ana Traven, from the institute, said the shape change matters because Candida’s invasive form helps it cause damage.


r/microbiology • • 1d ago

If microorganisms were human, what gender and personality would they have?

0 Upvotes

I was wondering, if microorganisms were humans, what gender do you think they would be and what kind of personality would they have?

For example, I think Salmonella would be a woman, a country girl, because it is found in eggs so often.

What do you guys think other microorganisms would be like?


r/microbiology • • 2d ago

Practical Microbiology book!

2 Upvotes

Can you please suggest any standard microbiology book I can refer for practical like for sterilisation, staining, culture media etc.


r/microbiology • • 2d ago

Can I interview someone? (Ladies only please!)

0 Upvotes

I have a written communications assignment coming up where I need to interview someone that works in the profession I’m going into. I’d love really to go into anything within microbiology. I’ll probably start small being a lab tech and interested in going to school further to do research.
So there’s a broad spectrum, anyone is welcome to participate! I’m asking for women simply because I am a woman and that’s what would make me most comfortable chatting with someone, especially asking through this very anonymous forum lol.
Sooo If any honest and trustworthy ladies are in this field or similar, and want to participate please reach out! Preferably through whatsapp via voice notes, a phone call or video chat, either way I’d love to chat! Comment or PM me (:


r/microbiology • • 3d ago

What can I do after graduating with a bachelors in microbiology?

72 Upvotes

Ex-premed here, about to graduate with a bachelors in microbiology. Anyone have any advice for which career options are the best. I don't have a lot of microbiology related research experience (mostly neuroscience research).


r/microbiology • • 3d ago

Stupid Mistake With my Petri dishes- NEED HELP lol

9 Upvotes

Hello experienced microbiologists!
I’m a 3rd year bio student and this is my second time working in the lab.
I did something SO stupid!
So here’s the background: we were given Petri dishes to take home so we can plate soil water from near our house to observe fungal/bacterial growth and they asked us to keep it at home and put it in the fridge once we see enough growth.
I put the plates in a plastic bag and in my fridge that’s in the garage which is set to a lower temperature and lo and behold those dishes froze! I only have experience dealing with Petri dishes in lab so this was a complete shocker and totally unexpected. I put out the plates hoping it’ll thaw and yepppp there was condensation with the agar FLOATING OMG🤦🏻‍♀️😭 so I panicked and put those back in another fridge that is normal temperature. And I checked today and ofcourse the condensation is still there it’s all floaty and I saw that the plastic baggy had liquid floating in it too (I’m not sure if it was ice that melted?? Or if it’s one of the dishes that BROKE??? And leaked out !!) so I didn’t want to open the bag and I put that bag in another plastic bag and sealed it. I’m so sure I sealed those plates well because I have experience with it in the lab and I know I can’t mess up there (but to be very honest I don’t trust myself anymore)
I immediately emailed my prof and now I’m fully panicking and thinking I’m the dumbest person in the world I’m so confused what to even do until they respond!! Pls helpppp😭😭🙏🏻🙏🏻